To the top of the page
Chapter 3.3.2
Module:  3.
Novel bioproducts development and validation in an operational environment
Unit:  3.3.
Bioproducts (incl. fisheries and aquacultures) validation in an operational environment
Chapter:  3.3.2.
Extensive bioproduct characterization at development and processing stages

Bioproducts obtained from fisheries and aquacultures, like any biotechnological products, must be extensively characterized at development and processing stages to define strict specifications, in terms of physicochemical properties, biological activity, immunochemical properties, purity, impurities and contaminants. Bioproducts need to meet certain predefined acceptance criteria. The main aspects that need verification concern the consistency of manufacture and the stability and safety of the bioproduct.

For example, in the case of medicinal products for human use (including biopharmaceuticals, EMEA's guidelines require extensive characterization to be done in the development phase as well as following considerable process modifications. Ideally, this characterization will include comparison with a reference standard. and/or the bioproduct's natural equivalent, if feasible. Manufacturers should also present suitably characterized in-house reference materials at the time of submission. These reference materials are intended for analytical (physicochemical and biological) assays of production lots.

A range of analytical methods are employed to characterize the physicochemical properties: composition, physical properties, and primary structure (desired secondary, tertiary etc. structure is commonly confirmed based on biological activity). This set of techniques aims to uncover any changes that may occur in the structure of the desired bioproduct during manufacture or storage, or as a natural part of the bioprocess. An overview of the common approaches is given in Table 3.3.2 (more 3.3.3).

Table 3.3.2 Approaches typically used for structural characterization and confirmation, and evaluation of physicochemical properties of the desired product, drug substance and/or drug product.
Type of analysis Characteristics
Structural characterization and confirmation

  • Amino acid sequence
  • Amino acid composition
  • Terminal amino acid sequence
  • Peptide map
  • Sulfhydryl group(s) and disulfide bridges
  • Carbohydrate structure
Physicochemical properties analysis

  • Molecular weight or size
  • Isoform pattern
  • Extinction coefficient (or molar absorptivity)
  • Electrophoretic patterns
  • Liquid chromatographic patterns
  • Spectroscopic profiles

Heterogeneity that occurs during manufacture and/or storage affects the quality of the bioproduct. This heterogeneity should have a consistent pattern, with consistency in product activity, efficacy and safety. Protein heterogeneity that is inherent to the bioprocess is often due to alternative post-translational modifications. What is important in this case is for the manufacturer to demonstrate that the resulting mixture of forms is safe (e.g. immunologically safe) and active, and that the pattern of heterogeneity is consistent. Any deviations from the pattern defined at the preclinical and clinical stages require additional testing.

Biological properties (i.e. biological activity) are assessed to demonstrate that the bioproduct has the ability/capacity to exert its desired biological effect. The manufacturer should provide a valid bioassay for this purpose. The most common types of bioassays and the endpoints they use are outlined in Table 3.3.3.

Table 3.3.3 Types of assays commonly used for assessment of biological activity.
Biological assays Endpoints
Animal-based assays Experimental animals' biological response to the product
Cell-culture-based assays Biochemical or physiological response at the cellular level
Biochemical assays Biological activities (enzyme activity, immunological reaction, ligand/receptor binding, etc.)

The quantitative measure of biological activity is the (i.e. potency) of the bioproduct (versus mass in the case of physicochemical assays). The potency reflects the biological properties of the bioproduct. When the bioproduct is to be used as a drug, its activity in the biological assay should correlate with the expected clinical response. The units of activity measured in the biological assay should be calibrated against an international or national reference standard, or if such does not exist, against an in-house one. For bioproducts with complex higher order structure, the biological activity may be more informative than the physicochemical properties. There are only limited cases when physicochemical tests may replace a biological assay (Table 3.3.4 ).

EMEA requires the choice of relevant quantitative assay (biological and/or physicochemical) for the purpose of batch release to be justified by the manufacturer.

Table 3.3.4 Conditions justifying the substitution of biological assays with physicochemical tests.
Physicochemical tests can replace biological assay when:
  • Physicochemical techniques can provide sufficient information about the bioproduct,
    including its higher-order structure, and
    there is relevant correlation to its biological activity
  • The bioproduct has a well-established manufacturing history

Testing the immunological properties is essential when the bioproduct is an antibody (affinity, avidity and immunoreactivity) or a protein drug. In the case of antibodies, the tests are typically binding assays to purified antigens and defined regions of antigens are used. In the case of protein drugs, immunochemical assays are often applied (e.g., ELISA, Western-blot) to demonstrate the protein's identity, homogeneity or purity, or to quantify it. If the bioproduct's immunochemical properties are among the criteria for lot release, these properties should be made available.

Another important property of bioproducts that needs to be tested is their absolute and relative purity. The relative purity is defined based on specific activity, i.e. units of biological activity per milligram of product. Since it largely depends on the method of choice, EMEA's guidelines require that the purity of the drug substance/product be tested using a combination of analytical assays.

As pointed out above, bioproducts can include several molecular entities or variants, e.g. owing to intrinsic or manufacture/storage-related heterogeneity. Such variants are not considered impurities, but product-related substances, when they are an anticipated part of the desired product and their properties do not deviate from its specifications. Product-related substances should meet pre-defined individual and/or collective acceptance criteria, as appropriate. For the purpose of lot release, purity should be determined based on an appropriate set of appropriately selected methods.

The manufacturer is also required to assess the impurities, which are defined as components that do not have properties comparable to those of the desired product with respect to activity, efficacy and safety. Impurities may be either process- or product-related (Table 3.3.5); of known structure, partially characterized or unidentified.

Table 3.3.5 Types of impurities based on origin.
Type of impurities Origin Examples
Process-related impurities Generated during the manufacturing process or downstream processing

  • Cell substrates (e.g., host cell proteins, host cell DNA);
  • Cell culture components (e.g., inducers, antibiotics, or media components)
Product-related impurities Generated during manufacture and/or storage

  • Precursors
  • Degradation products

EMEA requires that acceptance criteria (individual and/or collective) be set for impurities (product-related and process-related), as appropriate, based on data obtained from lots used in preclinical and clinical studies and manufacturing consistency lots. For the purpose of lot release, impurities should be reported based on an appropriate subset of analytical methods. Examples of analytical procedures which may be employed to test for the presence of impurities are listed in more 3.3.4.

Contaminants are defined as all adventitiously introduced materials not intended to be part of the manufacturing process (1). For example, contaminants include chemical and biochemical materials (e.g., microbial enzymes), and/or microbial species. Contaminants must be strictly avoided and/or controlled based on suitable in-process acceptance criteria or action limits. Action limits do not apply to certain contaminants, e.g. viruses or mycoplasma, so the strategies proposed in ICH Harmonised Tripartite Guidelines "Quality of Biotechnological / Biological Products: Viral Safety Evaluation of Biotechnology Derived Products Derived from Cell Lines of Human or Animal Origin" and "Quality of Biotechnological/Biological Products: Derivation and Characterisation of Cell Substrates Used for Production of Biotechnological/Biological Products" should be considered. The control of contaminants is, naturally, also essential in food safety (more 3.3.5.).

Another essential property of bioproducts is their quantity. A typical quantitative measure is protein content. The methods used for quantitative analysis are usually physicochemical ones. If the obtained quantity values directly correlate with the values obtained in the biological assay, it is possible to use measurement of quantity instead of the measurement of biological activity in the manufacturing processes.